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3. Some functions like 'create folder' do not work.
Most likely safemode is enabled on your system. The Uploader tries to detect this as good as possible. If this is the case I recommend to disable the browsing functionality of the flash. You can try to modify the safemode detection in the tfu_helper.php if you think the flash has the rights e.g. to create folder. create folders is btw. even disabled if a folder could be created but no files can be stored in there!
If the resize box is missing although it is enabled in the config most likely the gd lib is not installed or not at least version 2.0 - check the tfu.log for details!